Team:Shenzhen SZMS/Project

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{| class="wikitable" align=center
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|align=center width=12.5%|[[Team:Shenzhen SZMS|Home]]
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|align=center width=12.5%|[[Team:Shenzhen SZMS/Team Members|Team Members]]
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|align=center width=12.5%|[[Team:Shenzhen SZMS/Project|Project]]
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|align=center width=12.5%|[[Team:Shenzhen SZMS/Modelling|Modelling]]
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|align=center width=12.5%|[[Team:Shenzhen SZMS/Lab|Lab]]
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|align=center width=12.5%|[[Team:Shenzhen SZMS/iGem Safety Q&A|Safety]]
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|align=center width=12.5%|[[Team:Shenzhen SZMS/Gallery|Gallery]]
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|align=center width=12.5%|[[Team:Shenzhen SZMS#Human Practice|Human Practice]]
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Our project is to create an “E. coli Plant-sitter” that achieves smart maintenance of healthy plant growth through the application of synthetic biology to temperature moderation. We hope that our toolkit will simplify the process of plant cultivation, enlarge the public understanding of synthetic biology, and make the methods and technology of synthetic biology accessible to people’s daily life.
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[https://2014hs.igem.org/Main_Page<br> <<Back to wiki main page]
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----
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Find more about our project below!
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Hothouse plants whose preferential temperature ranges from 25~30℃ are exposed to the threat of low productivity and unhealthy growth in overly cold environments. Therefore, we came up with a system that aids the healthy growth of these plants by protecting them from overly low temperatures through smart temperature control. Our system of temperature moderation includes two parts, temperature sensing and temperature regulating.
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== Background ==
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'''E. coli Plant-sitter'''
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Our project is to create an “E. coli Plant-sitter” that achieves smart maintenance of healthy plant growth through the application of synthetic biology to temperature moderation. We hope that our toolkit will aid the process of plant cultivation, enlarge the public understanding of synthetic biology, and make the methods and technology of synthetic biology accessible to people’s daily life.
 +
Daily life – yes, on earth our Plant-sitter can be well applied to the growth of plants – but what about…
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Wait for it –<br>
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'''MARS!'''<br>
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[http://en.wikipedia.org/wiki/Mars Mars], lying four hundred million kilometers from earth, has the most earth-like seasons due to Mars and Earth’s similar tilts of rotational axes. As a result, in order for men to make use of Martian resources and to develop its potential as an alternative human residence in the universe, a Mars Migration Program was issued SpaceX, indicating that founding a human community on Mars requires 1) releasing carbon dioxide to make the atmosphere denser and to create raw materials for photosynthesis; '''2) cultivating plants beside human residence to generate oxygen.'''<br>
 +
'''– which is where our E.coli Plant-sitter helps.'''
 +
Although there will be basic heat supply in the houses, the healthy growth of the plants is still under threat as Mars’ surface temperature varies from -143℃ to 35℃. Therefore, we came up with a system that protects the plants from overly cold environment through smart temperature control, keeping the temperature at around 27℃, aiding the plants who are burdened with the glorious purpose of generating oxygen to defend against the Jotunheim weather on Mars.
-
The process of temperature sensing involves a promoter, a 27℃ RNA thermometer, and cI. The process of temperature regulating involves a cI regulated promoter, an enzyme which catalyzes an exothermic chemical reaction, a 32℃ RNA thermometer, and a GFP LVA device which serves to indicate the occurrence of a change in temperature. The promoter in temperature sensing part is consistently on and thus so is the process of cI’s transcription from DNA to RNA. When the temperature is below 27℃, the 27℃RNA thermometer takes a curved, locked structure which does not enable translation from RNA to protein cI, which in turn allows the activation of the cI regulated promoter, the production of the enzyme, the occurrence of an exothermic reaction which heats up the environment, and the expression of GFP LVA tag which gives out green light to indicate that the temperature is below 27℃ and that our device of temperature control is doing its work. When the temperature rises and reaches 27 ℃ as a result of the exothermic reaction, the 27℃ RNA thermometer enables the translation of cI protein, which in turn represses the cI regulated promoter, ending the release of heat through the exothermic reaction by stopping the production of the enzyme which catalyzes that reaction. As a result of an inactive promoter (the cI regulated), the GFP also stops its expression and is decomposes, indicating that the temperature has risen from below 27 ℃ to 27 ℃and that our system of temperature control has done its work.
 
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If the 27℃ RNA thermometer fails to stop the heating process at around 27℃ and the temperature keeps rising up to 32℃, the 32℃ RNA thermometer is activated, leading to the presence of protein cI, which places a double-check on the inhibition of the heating process.
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Plants whose preferential temperature ranges from 25~30℃ are exposed to the threat of low productivity and unhealthy growth in overly cold environments. Therefore, we came up with a system that aids the healthy growth of these plants by protecting them from overly low temperatures through smart temperature control. Our system of temperature moderation includes two parts, temperature sensing and temperature regulating.
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== Plasmid and Parts used ==
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[[File:huoxing1.jpg|200px]]
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[[File:Plant-sitter temperature control Map.jpg|thumbnail|250px|right|The plasmid map.]]
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[[File:huoxing3.jpg|200px]]
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[[File:huoxing4.jpg|200px]]
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[[File:huoxing2.jpg|200px]]
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The parts we used are given below:
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== Plasmid and Working Details ==
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{| class="wikitable" align=right width=400px |+ Parts we used
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{| class="wikitable"
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|-
|-
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!width=50px| Compile !!width=100px| Function !!width=300px| Introduction
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|colspan=3 align="center"|[[File:Plant-sitter temperature control Map latest version.jpg|400px|The plasmid map]]
|-
|-
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| J23106 || Promoter || It promotes the transcription of the following parts.
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!width=10%| Compile !!width=30%| Function !!width=60%| Introduction
|-
|-
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| R0051 || CI regulated Promoter || It promotes the transcription without CI. When CI is binding to it,it is repressed.
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| J23106 || Promoter || It promotes the transcription of the following parts. [http://parts.igem.org/Part:BBa_J23106 More]
|-
|-
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| K115016 || 27℃ RBS || It only promotes the translation when the temperature is over 27℃
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| R0051 || CI regulated Promoter || It promotes the transcription without CI. When CI is binding to it,it is repressed. [http://parts.igem.org/Part:BBa_R0051 More]
|-
|-
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| K115017 || 32℃ RBS || It only promotes the translation when the temperature is over 32℃
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| K115016 || 27℃ RBS || It only promotes the translation when the temperature is over 27℃ [http://parts.igem.org/Part:BBa_K115016 More]
|-
|-
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| B0030 || strong RBS || It can promotes the translation strongly.
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| K115017 || 32℃ RBS || It only promotes the translation when the temperature is over 32℃ [http://parts.igem.org/Part:BBa_K115017 More]
|-
|-
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| C0051 || Coding sequence || It is the coding sequence of CI Protein.
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| B0030 || strong RBS || It can promotes the translation strongly. [http://parts.igem.org/Part:BBa_B0030 More]
|-
|-
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| 1.7.7.2 (KEGG) || Coding sequence || We got this part from bacillus subtilis best7613 strain.It catalyzes the reaction which converts Nitrate to Nitrite.
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| C0051 || Coding sequence || It is the coding sequence of CI Protein. [http://parts.igem.org/Part:BBa_C0051 More]
|-
|-
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| K145015 || Coding scquence || It is the coding sequence of GFP.
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| 1.7.7.2 (KEGG) || Coding sequence || We got this part from bacillus subtilis best7613 strain.It catalyzes the reaction which converts Nitrate to Nitrite. [http://www.genome.jp/dbget-bin/www_bget?ec:1.7.7.2 More]
|-
|-
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| B0015 || Terminator || It can stop the transcription.
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| K145015 || Coding scquence || It is the coding sequence of GFP. [http://parts.igem.org/Part:BBa_K145015 More]
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|-
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| B0015 || Terminator || It can stop the transcription. [http://parts.igem.org/Part:BBa_B0015 More]
|}
|}
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The process of temperature sensing involves a promoter, a 27℃ RNA thermometer, and cI. The process of temperature regulating involves a cI regulated promoter, an enzyme which catalyzes an exothermic chemical reaction, a 32℃ RNA thermometer, and a GFP LVA device which serves to indicate the occurrence of a change in temperature. The promoter in temperature sensing part is consistently on and thus so is the process of cI’s transcription from DNA to RNA. When the temperature is below 27℃, the 27℃RNA thermometer takes a curved, locked structure which does not enable translation from RNA to protein cI, which in turn allows the activation of the cI regulated promoter, the production of the enzyme, the occurrence of an exothermic reaction which heats up the environment, and the expression of GFP LVA tag which gives out green light to indicate that the temperature is below 27℃ and that our device of temperature control is doing its work. When the temperature rises and reaches 27 ℃ as a result of the exothermic reaction, the 27℃ RNA thermometer enables the translation of cI protein, which in turn represses the cI regulated promoter, ending the release of heat through the exothermic reaction by stopping the production of the enzyme which catalyzes that reaction. As a result of an inactive promoter (the cI regulated), the GFP also stops its expression and is decomposes, indicating that the temperature has risen from below 27 ℃ to 27 ℃and that our system of temperature control has done its work.
 +
If the 27℃ RNA thermometer fails to stop the heating process at around 27℃ and the temperature keeps rising up to 32℃, the 32℃ RNA thermometer is activated, leading to the presence of protein cI, which places a double-check on the inhibition of the heating process.
 +
 +
=== Temperature Sensing ===
 +
This process involves BBa_J23106 (promoter), BBa_K115016 (27℃ RNA thermometer), and cI (Repressor protein cI).
 +
BBa_J23106 is consistently on and thus so is the process of cI’s transcription from DNA to RNA. When the temperature is below 27℃,
 +
the 27℃ sensitive RNA thermometer does not enable translation from RNA to protein cI, which in turn allows the activation of BBa_R0051, the production of the enzyme, the occurrence of an exothermic reaction which heats up the environment,
 +
and the expression of GFP LVA tag which gives out green light to indicate that the temperature is below 27℃ and that our device of temperature control is doing its work.
 +
 +
When the temperature rises and reaches 27 ℃ as a result of the exothermic reaction, BBa_K115016 (27℃ RNA thermometer) enables the translation of cI protein, which in turn represses BBa_R0051,
 +
ending the release of heat through the exothermic reaction by stopping the production of the enzyme which catalyzes that reaction.
 +
 +
As a result of an inactive promoter (BBa_R0051), the GFP also stops its expression and is decomposes,
 +
indicating that the temperature has risen from below 27 ℃ to 27 ℃and that our system of temperature control has done its work.
-
=Temperature Sensing=
+
If BBa_K115016 (27℃ RNA thermometer) fails to stop the heating process at around 27℃ and the temperature keeps rising up to 32℃, BBa_K115017 (32℃ RNA thermometer) is activated, leading to the presence of protein cI,  
-
This process involves BBa_J23106 (promoter), BBa_K115016 (27℃ RNA thermometer), and cI (Repressor protein cI).
+
which places a double-check on the inhibition of the heating process.
-
BBa_J23106 is consistently on and thus so is the process of cI’s transcription from DNA to RNA. When the temperature is below 27℃, the 27℃ sensitive RNA thermometer does not enable translation from RNA to protein cI, which in turn allows the activation of BBa_R0051, the production of the enzyme, the occurrence of an exothermic reaction which heats up the environment, and the expression of GFP LVA tag which gives out green light to indicate that the temperature is below 27℃ and that our device of temperature control is doing its work. When the temperature rises and reaches 27 ℃ as a result of the exothermic reaction, BBa_K115016 (27℃ RNA thermometer) enables the translation of cI protein, which in turn represses BBa_R0051, ending the release of heat through the exothermic reaction by stopping the production of the enzyme which catalyzes that reaction. As a result of an inactive promoter (BBa_R0051), the GFP also stops its expression and is decomposes, indicating that the temperature has risen from below 27 ℃ to 27 ℃and that our system of temperature control has done its work.
+
-
If BBa_K115016 (27℃ RNA thermometer) fails to stop the heating process at around 27℃ and the temperature keeps rising up to 32℃, BBa_K115017 (32℃ RNA thermometer) is activated, leading to the presence of protein cI, which places a double-check on the inhibition of the heating process.
+
 +
The process by which our temperature-control system operates may be better illustrated in the following flow chart:
-
  The process by which our temperature-control system operates may be better illustrated in the following flow chart:
+
=== Temperature Regulating ===
-
 
+
The process of temperature regulating involves BBa_J45503 (cI regulated promoter), an enzyme which catalyzes an exothermic chemical reaction, BBa_K115017 (32℃ RNA thermometer) and a GFP LVA device which serves to indicate the occurrence of a change in temperature.
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  [[File:IGem_-_New_Page.png|1000px]]
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<br style="clear:both;">
 +
----
 +
The following is a flowchart explaining how our E. coli Plant-sitter works.
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=Temperature Regulating=
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[[File:IGem_-_New_Page_Correcto.png|center|900px]]

Latest revision as of 03:39, 21 June 2014

Home Team Members Project Modelling Lab Safety Gallery Human Practice


<<Back to wiki main page


Find more about our project below!

Contents

Background

E. coli Plant-sitter Our project is to create an “E. coli Plant-sitter” that achieves smart maintenance of healthy plant growth through the application of synthetic biology to temperature moderation. We hope that our toolkit will aid the process of plant cultivation, enlarge the public understanding of synthetic biology, and make the methods and technology of synthetic biology accessible to people’s daily life. Daily life – yes, on earth our Plant-sitter can be well applied to the growth of plants – but what about… Wait for it –
MARS!
Mars, lying four hundred million kilometers from earth, has the most earth-like seasons due to Mars and Earth’s similar tilts of rotational axes. As a result, in order for men to make use of Martian resources and to develop its potential as an alternative human residence in the universe, a Mars Migration Program was issued SpaceX, indicating that founding a human community on Mars requires 1) releasing carbon dioxide to make the atmosphere denser and to create raw materials for photosynthesis; 2) cultivating plants beside human residence to generate oxygen.
– which is where our E.coli Plant-sitter helps. Although there will be basic heat supply in the houses, the healthy growth of the plants is still under threat as Mars’ surface temperature varies from -143℃ to 35℃. Therefore, we came up with a system that protects the plants from overly cold environment through smart temperature control, keeping the temperature at around 27℃, aiding the plants who are burdened with the glorious purpose of generating oxygen to defend against the Jotunheim weather on Mars.


Plants whose preferential temperature ranges from 25~30℃ are exposed to the threat of low productivity and unhealthy growth in overly cold environments. Therefore, we came up with a system that aids the healthy growth of these plants by protecting them from overly low temperatures through smart temperature control. Our system of temperature moderation includes two parts, temperature sensing and temperature regulating.

Huoxing1.jpg Huoxing3.jpg Huoxing4.jpg Huoxing2.jpg

Plasmid and Working Details

The plasmid map
Compile Function Introduction
J23106 Promoter It promotes the transcription of the following parts. More
R0051 CI regulated Promoter It promotes the transcription without CI. When CI is binding to it,it is repressed. More
K115016 27℃ RBS It only promotes the translation when the temperature is over 27℃ More
K115017 32℃ RBS It only promotes the translation when the temperature is over 32℃ More
B0030 strong RBS It can promotes the translation strongly. More
C0051 Coding sequence It is the coding sequence of CI Protein. More
1.7.7.2 (KEGG) Coding sequence We got this part from bacillus subtilis best7613 strain.It catalyzes the reaction which converts Nitrate to Nitrite. More
K145015 Coding scquence It is the coding sequence of GFP. More
B0015 Terminator It can stop the transcription. More

The process of temperature sensing involves a promoter, a 27℃ RNA thermometer, and cI. The process of temperature regulating involves a cI regulated promoter, an enzyme which catalyzes an exothermic chemical reaction, a 32℃ RNA thermometer, and a GFP LVA device which serves to indicate the occurrence of a change in temperature. The promoter in temperature sensing part is consistently on and thus so is the process of cI’s transcription from DNA to RNA. When the temperature is below 27℃, the 27℃RNA thermometer takes a curved, locked structure which does not enable translation from RNA to protein cI, which in turn allows the activation of the cI regulated promoter, the production of the enzyme, the occurrence of an exothermic reaction which heats up the environment, and the expression of GFP LVA tag which gives out green light to indicate that the temperature is below 27℃ and that our device of temperature control is doing its work. When the temperature rises and reaches 27 ℃ as a result of the exothermic reaction, the 27℃ RNA thermometer enables the translation of cI protein, which in turn represses the cI regulated promoter, ending the release of heat through the exothermic reaction by stopping the production of the enzyme which catalyzes that reaction. As a result of an inactive promoter (the cI regulated), the GFP also stops its expression and is decomposes, indicating that the temperature has risen from below 27 ℃ to 27 ℃and that our system of temperature control has done its work. If the 27℃ RNA thermometer fails to stop the heating process at around 27℃ and the temperature keeps rising up to 32℃, the 32℃ RNA thermometer is activated, leading to the presence of protein cI, which places a double-check on the inhibition of the heating process.

Temperature Sensing

This process involves BBa_J23106 (promoter), BBa_K115016 (27℃ RNA thermometer), and cI (Repressor protein cI). BBa_J23106 is consistently on and thus so is the process of cI’s transcription from DNA to RNA. When the temperature is below 27℃, the 27℃ sensitive RNA thermometer does not enable translation from RNA to protein cI, which in turn allows the activation of BBa_R0051, the production of the enzyme, the occurrence of an exothermic reaction which heats up the environment, and the expression of GFP LVA tag which gives out green light to indicate that the temperature is below 27℃ and that our device of temperature control is doing its work.

When the temperature rises and reaches 27 ℃ as a result of the exothermic reaction, BBa_K115016 (27℃ RNA thermometer) enables the translation of cI protein, which in turn represses BBa_R0051, ending the release of heat through the exothermic reaction by stopping the production of the enzyme which catalyzes that reaction.

As a result of an inactive promoter (BBa_R0051), the GFP also stops its expression and is decomposes, indicating that the temperature has risen from below 27 ℃ to 27 ℃and that our system of temperature control has done its work.

If BBa_K115016 (27℃ RNA thermometer) fails to stop the heating process at around 27℃ and the temperature keeps rising up to 32℃, BBa_K115017 (32℃ RNA thermometer) is activated, leading to the presence of protein cI, which places a double-check on the inhibition of the heating process.

The process by which our temperature-control system operates may be better illustrated in the following flow chart:

Temperature Regulating

The process of temperature regulating involves BBa_J45503 (cI regulated promoter), an enzyme which catalyzes an exothermic chemical reaction, BBa_K115017 (32℃ RNA thermometer) and a GFP LVA device which serves to indicate the occurrence of a change in temperature.


The following is a flowchart explaining how our E. coli Plant-sitter works.

IGem - New Page Correcto.png