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-            <h1>
-How to customize an iGEM wiki
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-</p>
-<table id="toc" class="toc"><tr><td><div id="toctitle"><h2>Contents</h2></div>
-<ul>
-<li class="toclevel-1 tocsection-1"><a href="#Sharing_is_caring"><span class="tocnumber">1</span> <span class="toctext">Sharing is caring</span></a></li>
-<li class="toclevel-1 tocsection-2"><a href="#Getting_started"><span class="tocnumber">2</span> <span class="toctext">Getting started</span></a></li>
-<li class="toclevel-1 tocsection-3"><a href="#Using_templates"><span class="tocnumber">3</span> <span class="toctext">Using templates</span></a>
-<ul>
-<li class="toclevel-2 tocsection-4"><a href="#Centralizing_the_layout_using_templates"><span class="tocnumber">3.1</span> <span class="toctext">Centralizing the layout using templates</span></a></li>
-<li class="toclevel-2 tocsection-5"><a href="#Helping_your_team_using_templates"><span class="tocnumber">3.2</span> <span class="toctext">Helping your team using templates</span></a></li>
-<li class="toclevel-2 tocsection-6"><a href="#iGEMs_default_styling"><span class="tocnumber">3.3</span> <span class="toctext">iGEMs default styling</span></a></li>
-</ul>
-</li>
-<li class="toclevel-1 tocsection-7"><a href="#Styling_the_wiki"><span class="tocnumber">4</span> <span class="toctext">Styling the wiki</span></a>
-<ul>
-<li class="toclevel-2 tocsection-8"><a href="#How_to_add_your_stylesheet"><span class="tocnumber">4.1</span> <span class="toctext">How to add your stylesheet</span></a></li>
-<li class="toclevel-2 tocsection-9"><a href="#Styling_tricks"><span class="tocnumber">4.2</span> <span class="toctext">Styling tricks</span></a>
-<ul>
-<li class="toclevel-3 tocsection-10"><a href="#Removing_the_MediaWiki_look"><span class="tocnumber">4.2.1</span> <span class="toctext">Removing the MediaWiki look</span></a></li>
-<li class="toclevel-3 tocsection-11"><a href="#Redesigning_the_top_menubar"><span class="tocnumber">4.2.2</span> <span class="toctext">Redesigning the top menubar</span></a></li>
-</ul>
-</li>
-<li class="toclevel-2 tocsection-12"><a href="#Get_inspiration_in_our_stylesheet"><span class="tocnumber">4.3</span> <span class="toctext">Get inspiration in our stylesheet</span></a></li>
-</ul>
-</li>
-<li class="toclevel-1 tocsection-13"><a href="#jQuery_hacks"><span class="tocnumber">5</span> <span class="toctext">jQuery hacks</span></a>
-<ul>
-<li class="toclevel-2 tocsection-14"><a href="#Remove_all_empty_.3Cp.3E.3C.2Fp.3E_tags"><span class="tocnumber">5.1</span> <span class="toctext">Remove all empty &lt;p&gt;&lt;/p&gt; tags</span></a></li>
-<li class="toclevel-2 tocsection-15"><a href="#LaTeX_equations"><span class="tocnumber">5.2</span> <span class="toctext">LaTeX equations</span></a></li>
-<li class="toclevel-2 tocsection-16"><a href="#Fix_Internet_Explorer"><span class="tocnumber">5.3</span> <span class="toctext">Fix Internet Explorer</span></a></li>
-</ul>
-</li>
-</ul>
-</td></tr></table><script>if (window.showTocToggle) { var tocShowText = "show"; var tocHideText = "hide"; showTocToggle(); } </script>
-<h2> <span class="mw-headline" id="Sharing_is_caring"> Sharing is caring </span></h2>
-<p>... that's why I created this page. I really hope that you can benefit from it, and that you do not use a lot of time making the same mistakes as I did. Enjoy!
-</p><p>And hey, please do the same thing!
-</p>
-<h2> <span class="mw-headline" id="Getting_started"> Getting started </span></h2>
-<p>So what are this WikiMedia thing, and how do you style it? Here is what you need to know to get startet:
-</p>
-<ul><li> First of all, you'll have to learn the MediaWiki-markup, which can be found <a href="http://www.mediawiki.org/wiki/Help:Contents" class="external text" rel="nofollow">here</a>.
-</li><li> Next, you'll need to know that you do not have access to anything conserning the backend. All you can do to affect the appereance of your wiki, is to insert HTML-code directly the wiki-editor.
-</li></ul>
-<p><i>"So I need to paste all my styling-code into every single page on the wiki?"</i>
-</p><p>No! Read on...
-</p>
-<h2> <span class="mw-headline" id="Using_templates"> Using templates </span></h2>
-<h3> <span class="mw-headline" id="Centralizing_the_layout_using_templates"> Centralizing the layout using templates </span></h3>
-<p>Of course it would be would be pretty annoying if you had to paste your styling-code into every single page. Then you would have to change every single page every time you make a tiny change in the layout. What you can do is to centralize the layout by making use of <a href="http://www.mediawiki.org/wiki/Help:Templates" class="external text" rel="nofollow">templates</a>. In this way you can have all your styling and scripting in a template, which can be imported into all the other pages (by manually pasting code into each page unfortunately). This means that the styling and the scripting is completely isolated from the content, and present only one place, meaning that you will only have the make your changes this one place.
-</p><p>How does it work? You just put in this peace of code:
-</p>
-<pre>{{&lt; YOUR TEMPLATE GOES HERE &gt;}}
-</pre>
-<p>... and then everything from your template is loaded into that particular page.
-</p><p>Example:
-</p>
-<pre>{{:Team:DTU-Denmark/Templates/Navigationbar}}</pre>
-<p>... loads the navigation bar (which consists of <a href="https://2011.igem.org/wiki/index.php?title=Team:DTU-Denmark/Templates/Navigationbar&amp;action=edit" class="external text" rel="nofollow">this code</a>) into the page.
-</p>
-<h3> <span class="mw-headline" id="Helping_your_team_using_templates"> Helping your team using templates </span></h3>
-<p>As you can read in the <a href="http://www.mediawiki.org/wiki/Help:Templates" class="external text" rel="nofollow">Help:Templates</a>-section, you can also make templates that takes parameters. This way you can help your team. For instance you kan tell them to write
-</p>
-<pre>{{:Team:&lt; TEAM-NAME &gt;/Templates/NiceBox|&lt;title&gt;|&lt;subtile&gt;|&lt;text&gt;|&lt;linkto&gt;}}</pre>
-<p>... in stead of forcing them to learn everything about the box-model, how floats work and so forth...
-</p>
-<h3> <span class="mw-headline" id="iGEMs_default_styling"> iGEMs default styling </span></h3>
-<p>When to start styling, you are working on top of iGEMs default layout. This means that, if you do not override an particular rule, e.g. that &lt;h2&gt; is underlined, then &lt;h2&gt; will be underlined on your wiki. It can be helpfull to have a look at the <a href="https://2011.igem.org/wiki/skins/igem/main.css" class="external text" rel="nofollow">default styling</a>.
-</p>
-<h2> <span class="mw-headline" id="Styling_the_wiki"> Styling the wiki </span></h2>
-<h3> <span class="mw-headline" id="How_to_add_your_stylesheet"> How to add your stylesheet </span></h3>
-<p>You can always links to your own external stylesheet as you are used to:
-</p>
-<pre>&lt;link rel=&quot;stylesheet&quot; href=&quot;&lt; YOUR CSS FILE GOES HERE &gt;&quot; type=&quot;text/css&quot; /&gt;</pre>
-<p>But what do you do if you want the locate the css-file on iGEMs server, so that everybody in your team can access it? You simply create a new page, write down the styling as you would do in a normal css-file, and then you use the following code in stead:
-</p>
-<pre>&lt;link rel=&quot;stylesheet&quot; href=&quot;&lt; YOUR PAGE HERE &gt;?action=raw&amp;ctype=text/css&quot; type=&quot;text/css&quot; /&gt;</pre>
-<h3> <span class="mw-headline" id="Styling_tricks"> Styling tricks </span></h3>
-<h4> <span class="mw-headline" id="Removing_the_MediaWiki_look"> Removing the MediaWiki look </span></h4>
-<p>Removes header footer and borders:
-</p>
-<pre>
-#contentSub, #search-controls, .firstHeading, #footer-box, #catlinks, #p-logo {
-    display:none;}
-#top-section {
-    border: none;
-    height: 0px;}
-#content {
-    border: none;}
-</pre>
-<h4> <span class="mw-headline" id="Redesigning_the_top_menubar"> Redesigning the top menubar </span></h4>
-<pre>
-/* Removes &quot;teams&quot; from the menubar */
-#menubar &gt; ul &gt; li:last-child {
-    display: none;}
-/* Resizes the menubar to fik the links (default is 400px) */
-#menubar {
-    width: auto;}
-</pre>
-<p>Here is made the menubar show up only when moving the mouse on top of it:
-</p>
-<pre>
-body {
-    margin: 10px 0 0 0;
-    padding: 0;}
-#top-section {
-    width: 965px;
-    height: 0;
-    margin: 0 auto;
-    padding: 0;
-    border: none;}
-#menubar {
-    font-size: 65%;
-    top: -14px;}
-.left-menu:hover {
-    background-color: transparent;}
-#menubar li a {
-    background-color: transparent;}
-#menubar:hover {
-    color: white;}
-#menubar li a {
-    color: transparent;}
-#menubar:hover li a {
-    color: white;}
-</pre>
-<h3> <span class="mw-headline" id="Get_inspiration_in_our_stylesheet"> Get inspiration in our stylesheet </span></h3>
-<p>You can are welcome to take a look in our <a href="https://2011.igem.org/Team:DTU-Denmark/stylesheet?action=raw&amp;ctype=text/css" class="external text" rel="nofollow">stylesheet...</a>
-</p>
-<h2> <span class="mw-headline" id="jQuery_hacks"> jQuery hacks </span></h2>
-<h3> <span class="mw-headline" id="Remove_all_empty_.3Cp.3E.3C.2Fp.3E_tags"> Remove all empty &lt;p&gt;&lt;/p&gt; tags </span></h3>
-<p>Annoyed of all those &lt;p&gt;&lt;/p&gt; and &lt;p&gt; &lt;/p&gt; emerging everywere in your markup, distroying your layout by adding a bit of vertical space here and there?
-</p><p>They easily emerge when using templates or &lt;html&gt;&lt;/html&gt; tags. But fortunately they are just as easy to remove. All you need to do, is to paste in this code bit:
-</p>
-<pre>
-&lt;!-- Remove all empty &lt;p&gt; tags --&gt;
-&lt;script type=&quot;text/javascript&quot;&gt;
-    $(document).ready(function() {
-        $(&quot;p&quot;).filter( function() {
-            return $.trim($(this).html()) == '';
-        }).remove()
-    });
-&lt;/script&gt;
-</pre>
-<h3> <span class="mw-headline" id="LaTeX_equations"> LaTeX equations </span></h3>
-<p>It is possible to enabled TeX in a MediaWiki (<a href="http://www.mediawiki.org/wiki/Manual:Math" class="external text" rel="nofollow">Manual:Math</a>), but unfortunately it doesn't seem like iGEM has done that..
-</p><p>Another way to enable your wiki to display LaTeX equations, is to use <a href="http://www.mathjax.org/" class="external text" rel="nofollow">MathJax</a>. MathJax is a JavaScript file located at <a href="http://cdn.mathjax.org/mathjax/latest/MathJax.js" class="external free" rel="nofollow">http://cdn.mathjax.org/mathjax/latest/MathJax.js</a>, which reads your document after it has been loaded, and then changes the content of the document according to the notation. That is, it removes everything between any of the following delimiters...
-</p>
-<pre>\(...\)
-$...$ (if configured)
-\[...\]
-$$...$$
-\begin{?} ... \end{?}
-</pre>
-<p>...and replace them with equations. All you need to do is to add the following to your wiki tekst:
-</p>
-<pre>
-&lt;!-- MathJax (LaTeX for the web) --&gt;
-&lt;script type=&quot;text/javascript&quot; src=&quot;http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML&quot;&gt;&lt;/script&gt;
-</pre>
-<p>And if you want to use $...$ delimiters:
-</p>
-<pre>
-&lt;!-- MathJax (LaTeX for the web) --&gt;
-&lt;!-- This part is only if you want to use $...$ delimiters --&gt;
-&lt;script type=&quot;text/x-mathjax-config&quot;&gt;
-    MathJax.Hub.Config({tex2jax: {inlineMath: [['$','$'], ['\\(','\\)']]}});
-&lt;/script&gt;
-&lt;script type=&quot;text/javascript&quot; src=&quot;http://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML&quot;&gt;&lt;/script&gt;
-</pre>
-<p>See <a href="http://www.mathjax.org/docs/1.1/tex.html|MathJax" class="external text" rel="nofollow">documentation here</a>
-</p><p>I never managed to make "\label" and "\ref" work, but a non-tested version of the code, that enables the "\label" and "\ref" commands, can be found on GitHub. The issue is discussed <a href="https://github.com/mathjax/MathJax/issues/71" class="external text" rel="nofollow">here</a>.
-</p>
-<h3> <span class="mw-headline" id="Fix_Internet_Explorer"> Fix Internet Explorer </span></h3>
-<p>Tired of styling for Internet Explorer? Just use this simple fix:
-</p>
-<pre>
-&lt;!-- ie9.js (fixes all Internet Explorer browsers older than ie9) --&gt;
-&lt;!--[if lt IE 9]&gt;
-&lt;script src=&quot;http://ie7-js.googlecode.com/svn/version/2.1(beta4)/IE9.js&quot;&gt;&lt;/script&gt;
-&lt;![endif]--&gt;
-</pre>
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