Team:Jefferson VA SciCOS

From 2014hs.igem.org

(Difference between revisions)

Latest revision as of 22:03, 20 June 2014

Abstract

Solving a 4-Node Traveling Salesman Problem Using the hin/hixC Recombinant System Bacterial computing has become a feasible way to autonomously solve quantitative problems. We sought to utilize the computational capacity of E.coli K-12 to solve the Traveling Salesman Problem, a problem in theoretical computer science that asks for the shortest possible route that visits each node in a system at least once and returns to the original node. We utilized a series of initial configurations for the hin/hixC recombinant system that were previously developed by a 2006 iGEM team to solve the Hamiltonian Path Problem. In addition, we created a fourth node by splitting blue fluorescent protein (BFP) with a hixC site and reinserted this node into one of the composite hin/hixC paths. To simulate varied distance, we added a ribosome binding site of a different strength in between the initial recombinant system and the fourth node.

Background

Established in 1985, Thomas Jefferson High School for Science and Technology is the result of a partnership of businesses and schools created to improve education in science, mathematics, and technology. Representatives from business and industry and staff of the Fairfax County Public Schools worked together in curriculum and facilities development for the school. In recent years, local business leaders and Jefferson parents have formed the Jefferson Partnership Fund to help raise money to maintain and equip labs and classrooms in the school. As the Governor's School for Science and Technology in Northern Virginia, the school is also supported by the Virginia Department of Education. In addition to providing a specialized education for selected students in Fairfax County, Jefferson also serves Arlington, Loudoun, and Prince William county as well as the cities of Fairfax and Falls Church.

Mentors

We would also like to thank Dr. Mary Susan Burnett, a DNA teacher, researcher, and lab director who is currently employed at the Thomas Jefferson High School for Science and Technology. She guided us through the more difficult procedures in our experiment, and taught us all of the proper techniques and safety guidelines that we employed throughout our work.

Website designed and created by Lucas Kang.

Retrieved from "http://2014hs.igem.org/Team:Jefferson_VA_SciCOS"

@@ Line 1: / Line 1: @@
 <div id="header">{{Team:Jefferson_VA_SciCOS/Header}}</div>
-<!-- *** What falls between these lines is the Alert Box!  You can remove it from your pages once you have read and understood the alert *** -->
-<html>
-<div id="box" style="width: 700px; margin-left: 137px; padding: 5px; border: 3px solid #fe2b33; /*background-color: #fe2b33;*/">
-<div id="template" style="text-align: center; font-weight: bold; font-size: large; /*color: #f6f6f6*/; padding: 5px;">
-This is a template page. READ THESE INSTRUCTIONS.
-</div>
-<div id="instructions" style="text-align: center; font-weight: normal; font-size: small; /*color: #f6f6f6*/; padding: 5px;">
-You are provided with this team page template with which to start the iGEM season.  You may choose to personalize it to fit your team but keep the same "look." Or you may choose to take your team wiki to a different level and design your own wiki.  You can find some examples <a href="https://2009.igem.org/Help:Template/Examples">HERE</a>.
-</div>
-<div id="warning" style="/*text-align: center;*/ font-weight: bold; font-size: small; /*color: #f6f6f6*/; padding: 5px;">
-You <strong>MUST</strong> have the following information on your wiki:
-<ul style="font-weight:normal;">
-<li>a team description</li>
-<li>project description</li>
-<li>safety information (did your team take a safety training course? were you supervised in the lab?)</li>
-<li>team attribution (who did what part of your project?)</li>
-</ul>
-You may also wish to add other page such as:
-<ul style="font-weight:normal;">
-<li>lab notebook</li>
-<li>sponsor information</li>
-<li>other information</li>
-</ul>
-REMEMBER, keep all of your pages within your teams namespace. <br><span style="font-weight:normal; font-style:italic;">Example: 2013hs.igem.org/Team:Jefferson_VA_SciCOS/Our_Pets</span>
-</div>
-</div>
-</html>
-<!-- *********************** End of the alert box *********************** -->
 {|align="justify"
 |
-'''''Project'''
+'''''Abstract'''
 ----
-The amount of oxygenation at ulcer sites is a key determinant of the outcome of healing because oxygen is crucial to the healing process and for resistance to infection. The non-healing skin ulcers that are formed from diabetic gangrene tend to be hypoxic; hypoxia is a condition not favorable to tissue repair. According to numerous studies, topical treatments of growth factors and peripheral blood mononuclear cells can help treat ulcers non-invasively in gangrene patients. It is posited that the growth factors promote angiogenesis, the physiological process by which new blood vessels form from pre-existing vessels. It is also a vital process in growth and development as well as in repair of damaged tissue. Furthermore, angiogenesis can render greater oxygen delivery to wounded areas, further enhancing growth and recovery to the areas suffering from chronic ischemia. In order to promote angiogenesis in gangrenous sites, and in turn treat the ulcers, growth factors such as fibroblast growth factor (FGF), vascular endothelial growth factor (VGF), and keratinocyte growth factor (KGF) can be produced in elevated quantities. To address the issue of inadequate oxygen levels during the healing process, we coupled the VHb gene promoter, which encodes for the Vitreoscilla hemoglobin molecule, to a downstream gene encoding KGF. The VHb promoter is most activated at an oxygen threshold of 2%, allowing for maximum transcription of the KGF gene and production of the growth factor in response to conditions of hypoxia. We also wanted to tested the production of another essential growth factor, FGF, under the influence of various constitutive promoters. This oxygen-sensing device is part of an array of growing applications targeted towards the promotion of angiogenesis as a means of healing in patients with severe, diabetic gangrene.
+Solving a 4-Node Traveling Salesman Problem Using the hin/hixC Recombinant System
+Bacterial computing has become a feasible way to autonomously solve quantitative problems. We sought to utilize the computational capacity of E.coli K-12 to solve the Traveling Salesman Problem, a problem in theoretical computer science that asks for the shortest possible route that visits each node in a system at least once and returns to the original node. We utilized a series of initial configurations for the hin/hixC recombinant system that were previously developed by a 2006 iGEM team to solve the Hamiltonian Path Problem. In addition, we created a fourth node by splitting blue fluorescent protein (BFP) with a hixC site and reinserted this node into one of the composite hin/hixC paths. To simulate varied distance, we added a ribosome binding site of a different strength in between the initial recombinant system and the fourth node.
 |}
@@ Line 106: / Line 76: @@
 </body>
 </html>
 <html lang="en">
 <head>
@@ Line 111: / Line 82: @@
 body
 {
-     background-image: url('https://static.igem.org/mediawiki/2013hs/e/ed/Bloodcells-1.jpg');
+     background-image: url('https://static.igem.org/mediawiki/2014hs/7/78/Binary.png');
      background-position: top left;
 }
@@ Line 117: / Line 88: @@
 </head>
 </html>
-{|align="left"
-|
-|[[File:Image1.jpg|261px]][[File:Transparent.png|65px]][[File:Transparent.png|100px]][[File:Transparent.png|100px]][[File:Transparent.png|100px]][[File:Transparent.png|65px]][[File:Image2.jpg|261px]]
-|}
@@ Line 148: / Line 115: @@
 '''''Background'''
 ----
-Established in 1985, Thomas Jefferson High School for Science and Technology is the result of a partnership of businesses and schools created to improve education in science, mathematics, and technology. Representatives from business and industry and staff of the Fairfax County Public Schools worked together in curriculum and facilities development for the school. In recent years, local business leaders and Jefferson parents have formed the Jefferson Partnership Fund to help raise money to maintain and equip labs and classrooms in the school. As the Governor's School for Science and Technology in Northern Virginia, the school is also supported by the Virginia Department of Education. In addition to providing a specialized education for selected students in Fairfax County, Jefferson also serves other school districts including Arlington, Loudoun, and Prince William counties as well as the cities of Fairfax and Falls Church.
+Established in 1985, Thomas Jefferson High School for Science and Technology is the result of a partnership of businesses and schools created to improve education in science, mathematics, and technology. Representatives from business and industry and staff of the Fairfax County Public Schools worked together in curriculum and facilities development for the school. In recent years, local business leaders and Jefferson parents have formed the Jefferson Partnership Fund to help raise money to maintain and equip labs and classrooms in the school. As the Governor's School for Science and Technology in Northern Virginia, the school is also supported by the Virginia Department of Education. In addition to providing a specialized education for selected students in Fairfax County, Jefferson also serves Arlington, Loudoun, and Prince William county as well as the cities of Fairfax and Falls Church.
 |
+[[Image:Jefferson_VA_SciCOS_logo_colored.png|190px|right]]
-[[Image:Jefferson_VA_SciCOS_logo_colored.png|180px|right]]
 |}
 {|align="justify"
@@ Line 161: / Line 127: @@
 |
-[[Image:Burnett.png|90px|right]]
+[[Image:Burnett.png|120px|right]]
 |}